Mouse Diversity Genotyping Array - Annotations
Description
We have extensively annotated the array to help users interpret results, integrate array data with other genomic resources, and develop new uses for the array. Annotation and information regarding probe performance is provided below.
Data
1. Re-annotation – Didion et al. 2012
Description of annotation files (includes minor correction to description of column 25 on 01/21/13): README .txt
Annotation of C57BL/6J – Probe Annotation files (.txt):
- Chromosome 1
- Chromosome 2
- Chromosome 3
- Chromosome 4
- Chromosome 5
- Chromosome 6
- Chromosome 7
- Chromosome 8
- Chromosome 9
- Chromosome 10
- Chromosome 11
- Chromosome 12
- Chromosome 13
- Chromosome 14
- Chromosome 15
- Chromosome 16
- Chromosome 17
- Chromosome 18
- Chromosome 19
- Chromosome X
- Chromosome Y
- Mitochondria
Annotation of the Sanger strains – Probe Annotation files (.zip 60 MB):
2. Original Annotation – Yang et al. 2009
Probe Annotation files (Version 2.0 Mouse Build 37):
- SNP annotation file (.gz) 155 MB
- IGP annotation file (.gz) 113 MB
Publications
Didion JP, Yang H, Sheppard K, Fu CP, McMillan L, Pardo-Manuel de Villena F, Churchill GA
BMC Genomics. 2012 Jan 19;13(1):34
[ Full Text ]
PMCID: PMC3305361
[ software: MouseDivGeno ] bad link – access denied
[ data: CEL files ]
Yang H, Ding Y, Hutchins LN, Szatkiewicz J, Bell TA, Paigen BJ, Graber JH, Pardo-Manuel de Villena F, Churchill GA
Nat Methods. 2009 Sep;6(9):663-6
[ Full Text ]
PMCID: PMC2735580
[ data: Genotypes]
