Gene expression analysis of B.A chromosome substitution strains

Description

In the liver, two independent pools of samples from four or five animals were created for each of the 23 strains and both sexes. In order to validate results from the first sample collection, liver RNA samples were obtained from individual animals of strains B.A1, B.A6, and B.A15. Kidney RNA samples were collected from B.A and strains B.A1, B.A6, and B.A15 of both sexes and pooled in groups of four to five animals. For further details see Shockley and Churchill, 2006.

Data

Notes describing the experiment and analysis: ReadMe_v1.txt
Data and scripts for original liver samples: original_liver_samples.zip
Data and scripts for all liver samples: all_liver_samples.zip
Data and scripts for kidney samples: kidney_samples.zip
Data and scripts for repeated liver samples: repeated_liver_samples.zip
SNPs used in the study: snps.zip
Additional information supporting the manuscript: supplemental_material.pdf

Publications

Shockley KR, Churchill GA
Mamm Genome. 2006 Jun;17(6):598-614  PMCID: PMC