Older Publications

• Ackert-Bicknell CL, Demissie S, Marin de Evsikova C, Hsu YH, DeMambro VE, Karasik D, Cupples LA, Ordovas JM, Tucker KL, Cho K, Canalis E, Paigen B, Churchill GA, Forejt J, Beamer WG, Ferrari S, Bouxsein ML, Kiel DP, Rosen CJ
  PPARG by dietary fat interaction influences bone mass in mice and humans
  J Bone Miner Res. 2008 Sep; 23(9):1398-408 PMCID: PMC2683155 [ Full Text ]
  [ data ]

• Bailey JS, Grabowski-Boase L, Steffy BM, Wiltshire T, Churchill GA, Tarantino LM
  Identification of QTL for locomotor activation and anxiety using closely-related inbred strains
  Genes Brain Behav. 2008 Oct;7(7):761-9 PMCID: PMC2888940 [ Full Text ]
  [ data ]

• Burgess-Herbert SL, Cox A, Tsaih SW, Paigen B
  Practical Applications of the Bioinformatics Toolbox for Narrowing Quantitative Trait Loci
  Genetics. 2008 Dec;180(4):2227-35 PMCID: PMC2600954 [ Full Text ]

• Chen YG, Scheuplein F, Osborne MA, Tsaih SW, Chapman HD, Serreze DV
  Idd9/11 genetic locus regulates diabetogenic activity of CD4 T-cells in nonobese diabetic (NOD) mice
  Diabetes. 2008 Dec;57(12):3273-80 PMCID: PMC2584133 [ Full Text ]

• Chesler EJ, Miller DR, Branstetter LR, Galloway LD, Jackson BL, Philip VM, Voy BH, Culiat CT, Threadgill DW, Williams RW, Churchill GA, Johnson DK, Manly KF
  The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems genetics
  Mamm Genome. 2008 Jun;19(6):382-9 PMCID: PMC2745091 [ Full Text ]

• Churchill GA, Doerge RW
  Naive application of permutation testing leads to inflated type I error rates
  Genetics. 2008 Jan;178(1):609-10 PMCID: PMC2206111 [ Full Text ]

• Doorenbos C, Tsaih SW, Sheehan S, Ishimori N, Navis G, Churchill G, Dipetrillo K, Korstanje R
  Quantitative trait loci for urinary albumin in crosses between C57BL/6J and A/J inbred mice in the presence and absence of Apoe
  Genetics. 2008 May;179(1):693-9 PMCID: PMC2390645 [ Full Text ]
  [ data 1 ]
  [ data 2 ]

• Iraqi FA, Churchill G, Mott R
  The Collaborative Cross, developing a resource for mammalian systems genetics: a status report of the Wellcome Trust cohort
  Mamm Genome. 2008 Jun;19(6):379-81 PMID: 18521666 [ Full Text ]

• Ishimori N, Stylianou IM, Korstanje R, Marion MA, Li R, Donahue LR, Rosen CJ, Beamer WG, Paigen B, Churchill GA
  Quantitative trait loci for BMD in an SM/J by NZB/BlNJ intercross population and identification of Trps1 as a probable candidate gene
  J Bone Miner Res. 2008 Sep;23(9):1529-37 PMCID: PMC2586053 [ Full Text ]

• Kumar KG, Byerley LO, Volaufova J, Drucker DJ, Churchill GA, Li R, York B, Zuberi A, Richards BK
  Genetic variation in Glp1r expression influences the rate of gastric emptying in mice
  Am J Physiol Regul Integr Comp Physiol. 2008 Feb;294(2):R362-71 PMCID: PMC [ Full Text ]
  [ data 1 ]
  [ data 2 ]

• Li R, Svenson KL, Donahue LR, Peters LL, Churchill GA
  Relationships of dietary fat, body composition, and bone mineral density in inbred mouse strain panels
  Physiol Genomics. 2008 Mar 14;33(1):26-32 PMCID: PMC [ Full Text ]
  [ data ]

• Mrug M, Zhou J, Woo Y, Cui X, Szalai AJ, Novak J, Churchill GA, Guay-Woodford LM
  Overexpression of innate immune response genes in a model of recessive polycystic kidney disease
  Kidney Int. 2008 Jan;73(1):63-76 PMCID: PMC
  [ data ]

• Petkova SB, Yuan R, Tsaih SW, Schott W, Roopenian DC, Paigen B
  Genetic influence on immune phenotype revealed strain-specific variations in peripheral blood lineages
  Physiol Genomics. 2008 Aug 15;34(3):304-14 PMCID: PMC2519960 [ Full Text ]
  [ data ]

• Stylianou IM, Affourtit JP, Shockley KR, Wilpan RY, Abdi FA, Bhardwaj S, Rollins J, Churchill GA, Paigen B
  Applying gene expression, proteomics and single-nucleotide polymorphism analysis for complex trait gene identification
  Genetics. 2008 Mar;178(3):1795-805 PMCID: PMC2278051 [ Full Text ]
  [ data ]

• Su Z, Tsaih SW, Szatkiewicz J, Shen Y, Paigen B
  Candidate genes for plasma triglyceride, FFA, and glucose revealed from an intercross between inbred mouse strains NZB/B1NJ and NZW/LacJ
  J Lipid Res. 2008 Jul;49(7):1500-10 PMCID: PMC2431102 [ Full Text ]

• Su Z, Korstanje R, Tsaih SW, Paigen B
  Candidate genes for obesity revealed from a C57BL/6J x 129S1/SvImJ intercross
  Int J Obes (Lond). 2008 Jul;32(7):1180-9 PMCID: PMC2782629 [ Full Text ]

• Szatkiewicz JP, Beane GL, Ding Y, Hutchins L, Pardo-Manuel de Villena F, Churchill GA
  An imputed genotype resource for the laboratory mouse
  Mamm Genome. 2008 Mar;19(3):199-208 PMCID: PMC2725522 [ Full Text ]
  [ data build 37 ]
  [ data build 36 ]

• Yang H, Harrington CA, Vartanian K, Coldren CD, Hall R, Churchill GA
  Randomization in laboratory procedure is key to obtaining reproducible microarray results
  PLoS ONE. 2008;3(11):e3724 PMCID: PMC2579585 [ Full Text ]

• Churchill GA
  Recombinant inbred strain panels: a tool for systems genetics
  Physiol Genomics. 2007 Oct 22;31(2):174-5 PMCID: PMC [ Full Text ]

• Davidson CE, Li Q, Churchill GA, Osborne LR, McDermid HE
  Modifier locus for exencephaly in Cecr2 mutant mice is syntenic to the 10q25.3 region associated with neural tube defects in humans
  Physiol Genomics. 2007 Oct 22;31(2):244-51 PMCID: PMC [ Full Text ]
  [ data ]

• Herschkowitz JI, Simin K, Weigman VJ, Mikaelian I, Usary J, Hu Z, Rasmussen KE, Jones LP, Assefnia S, Chandrasekharan S, Backlund MG, Yin Y, Khramtsov AI, Bastein R, Quackenbush J, Glazer RI, Brown PH, Green JE, Kopelovich L, Furth PA, Palazzo JP, Olopade OI, Bernard PS, Churchill GA, Van Dyke T, Perou CM
  Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
  Genome Biol. 2007;8(5):R76 PMCID: PMC1929138 [ Full Text ]
  [ data ]

• Kiernan AE, Li R, Hawes NL, Churchill GA, Gridley T
  Genetic background modifies inner ear and eye phenotypes of jag1 heterozygous mice
  Genetics. 2007 Sep;177(1):307-11 PMCID: PMC2013712 [ Full Text ]
  [ data ]

• Lecka-Czernik B, Ackert-Bicknell C, Adamo ML, Marmolejos V, Churchill GA, Shockley KR, Reid IR, Grey A, Rosen CJ
  Activation of peroxisome proliferator-activated receptor gamma (PPARgamma) by rosiglitazone suppresses components of the insulin-like growth factor regulatory system in vitro and in vivo
  Endocrinology. 2007 Feb;148(2):903-11 PMCID: PMC1851001 [ Full Text ] 
  [ data ]

• Mackiewicz M, Shockley KR, Romer MA, Galante RJ, Zimmerman JE, Naidoo N, Baldwin DA, Jensen ST, Churchill GA, Pack AI
  Macromolecule biosynthesis: a key function of sleep
  Physiol Genomics. 2007 Nov 14;31(3):441-57 PMID: 17698924 [ Full Text ]
  [ data ]

• Nishihara E, Tsaih SW, Tsukahara C, Langley S, Sheehan S, Dipetrillo K, Kunita S, Yagami K, Churchill GA, Paigen B, Sugiyama F
  Quantitative trait loci associated with blood pressure of metabolic syndrome in the progeny of NZO/HILtJ x C3H/HeJ intercrosses
  Mamm Genome. 2007 Aug;18(8):573-83 PMID: 17641813 [ Full Text ]
  [ data ]

• Peters LL, Robledo RF, Bult CJ, Churchill GA, Paigen BJ, Svenson KL
  The mouse as a model for human biology: a resource guide for complex trait analysis
  Nat Rev Genet. 2007 Jan;8(1):58-69 PMCID: PMC

• Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K
  Evidence of a large-scale functional organization of mammalian chromosomes
  PLoS Biol. 2007 May;5(5):e127; author reply e128 PMCID: PMC1868061 [ Full Text ]

• Satagopan JM, Sen S, Churchill GA
  Sequential Quantitative Trait Locus Mapping in Experimental Crosses
  Stat Appl Genet Mol Biol. 2007;6:Article12 PMCID: PMC [ Full text ]

• Sen S, Satagopan JM, Broman KW, Churchill GA
  R/qtlDesign: inbred line cross experimental design
  Mamm Genome. 2007 Feb;18(2):87-93 PMCID: PMC2366108 [ Full Text ]

• Sheehan S, Tsaih SW, King BL, Stanton C, Churchill GA, Paigen B, DiPetrillo K
  Genetic analysis of albuminuria in a cross between C57BL/6J and DBA/2J mice
  Am J Physiol Renal Physiol 2007 Nov;293(5):F1649-56 PMCID: PMC [ Full Text ]
  [ data ]

• Shockley KR, Rosen CJ, Churchill GA, Lecka-Czernik B
  PPARgamma2 Regulates a Molecular Signature of Marrow Mesenchymal Stem Cells
  PPAR Res. 2007;2007:81219 PMCID: PMC2234088 [ Full Text ]
  [ data ]

• Svenson KL, Von Smith R, Magnani PA, Suetin HR, Paigen B, Naggert JK, Li R, Churchill GA, Peters LL
  Multiple trait measurements in 43 inbred mouse strains capture the phenotypic diversity characteristic of human populations
  J Appl Physiol. 2007 Jun;102(6):2369-78 PMCID: PMC [ Full Text ]
  [ data ]

• The International Stem Cell Initiative
  Characterization of human embryonic stem cell lines by the International Stem Cell Initiative
  Nat Biotechnol. 2007 Jul;25(7):803-16 PMCID: PMC

• Yang H, Bell TA, Churchill GA, Pardo-Manuel de Villena F
  On the subspecific origin of the laboratory mouse
  Nat Genet. 2007 Sep;39(9):1100-7 PMCID: PMC

• Yang H, Churchill G
  Estimating p-values in small microarray experiments
  Bioinformatics. 2007 Jan 1;23(1):38-43 PMCID: PMC [ Full Text ]
  [ data ]

• Baum AE, Solberg LC, Churchill GA, Ahmadiyeh N, Takahashi JS, Redei EE
  Test- and behavior-specific genetic factors affect WKY hypoactivity in tests of emotionality
  Behav Brain Res. 2006 May 15;169(2):220-30 PMCID: PMC3762875 [ Full text ]
  [ data ]

• Broman KW, Sen S, Owens SE, Manichaikul A, Southard-Smith EM, Churchill GA
  The X chromosome in quantitative trait locus mapping
  Genetics. 2006 Dec;174(4):2151-8 PMCID: PMC1698653 [ Full Text ]
  [ data ]

• Churchill GA
  The genetics of gene expression
  Mamm Genome. 2006 Jun;17(6):465 PMID: 16783627 [ Full Text ]

• Cui X, Affourtit J, Shockley KR, Woo Y, Churchill GA
  Inheritance patterns of transcript levels in f1 hybrid mice
  Genetics. 2006 Oct;174(2):627-37 PMCID: PMC1602077 [ Full Text ]
  [ data ]

• Graber JH, Churchill GA, Dipetrillo KJ, King BL, Petkov PM, Paigen K
  Patterns and mechanisms of genome organization in the mouse
  J Exp Zoolog A Comp Exp Biol. 2006 Sep 1;305(9):683-8 PMCID: PMC

• Ishimori N, Li R, Walsh KA, Korstanje R, Rollins JA, Petkov P, Pletcher MT, Wiltshire T, Donahue LR, Rosen CJ, Beamer WG, Churchill GA, Paigen B
  Quantitative trait loci that determine BMD in C57BL/6J and 129S1/SvImJ inbred mice
  J Bone Miner Res. 2006 Jan;21(1):105-12 PMCID: PMC
  [ data ]

• Li R, Tsaih SW, Shockley K, Stylianou IM, Wergedal J, Paigen B, Churchill GA
  Structural model analysis of multiple quantitative traits
  PLoS Genet. 2006 Jul;2(7):e114 PMCID: PMC1513264 [ Full Text ]
  [ data ]

• Peters LL, Lambert AJ, Zhang W, Churchill GA, Brugnara C, Platt OS
  Quantitative trait loci for baseline erythroid traits
  Mamm Genome. 2006 Apr;17(4):298-309 PMCID: PMC

• Reifsnyder PC, Li R, Silveira PA, Churchill G, Serreze DV, Leiter EH
  Conditioning the genome identifies additional diabetes resistance loci in Type 1 diabetes-resistant NOR/Lt mice
  Genes Immun. 2006 Mar;7(2):184 PMCID: PMC
  [ data ]

• Shockley KR, Churchill GA
  Gene expression analysis of mouse chromosome substitution strains
  Mamm Genome. 2006 Jun;17(6):598-614 PMCID: PMC 
  [ data ]

• Solberg LC, Baum AE, Ahmadiyeh N, Shimomura K, Li R, Turek FW, Takahashi JS, Churchill GA, Redei EE
  Genetic analysis of the stress-responsive adrenocortical axis
  Physiol Genomics. 2006 Nov 27;27(3):362-9 PMCID: PMC [ Full Text ]
  [ data ]

• Stylianou IM, Tsaih SW, Dipetrillo K, Ishimori N, Li R, Paigen B, Churchill G
  Complex genetic architecture revealed by analysis of high-density lipoprotein cholesterol in chromosome substitution strains and f2 crosses
  Genetics. 2006 Oct;174(2):999-1007 PMCID: PMC1602087 [ Full Text ]
  [ data 1 ]
  [ data 2 ]
  [ data 3 ]
  [ data 4 ]

• Stylianou IM, Korstanje R, Li R, Sheehan S, Paigen B, Churchill GA
  Quantitative trait locus analysis for obesity reveals multiple networks of interacting loci
  Mamm Genome. 2006 Jan;17(1):22-36 PMCID: PMC

• Wergedal JE, Ackert-Bicknell CL, Tsaih S-W, Sheng M H-C, Li R, Mohan S, Beamer WG, Churchill GA, Baylink DJ
  Femur mechanical properties in the F2 Progeny of an NZB/B1NJ x RF/J cross are regulated predominantly by genetic loci that regulate bone geometry
  J Bone Miner Res. 2006 Aug;21(8):1256-66 PMCID: PMC
  [ data ]

• Wittenburg H, Lyons MA, Li R, Kurtz U, Wang X, Mossner J, Churchill GA, Carey MC, Paigen B
  QTL mapping for genetic determinants of lipoprotein cholesterol levels in combined crosses of inbred mouse strains
  J Lipid Res. 2006 Aug;47(8):1780-90 PMCID: PMC [ Full Text ]
  [ data 1 ]
  [ data 2 ]

• Zimmerman JE, Rizzo W, Shockley KR, Raizen DM, Naidoo N, Mackiewicz M, Churchill GA, Pack AI
  Multiple mechanisms limit the duration of wakefulness in Drosophila brain
  Physiol Genomics. 2006 Nov 27;27(3):337-50 PMCID: PMC [ Full Text ]
  [ data ]

• Ackerman KG, Huang H, Grasemann H, Puma C, Singer JB, Hill AE, Lander E, Nadeau JH, Churchill GA, Drazen JM, Beier DR
  Interacting genetic loci cause airway hyperresponsiveness
  Physiol Genomics. 2005 Mar 21;21(1):105-11 PMCID: PMC [ Full Text ]
  [ data ]

• Ahmadiyeh N, Churchill GA, Solberg LC, Baum AE, Shimomura K, Takahashi JS, Redei EE
  Lineage is an epigenetic modifier of QTL influencing behavioral coping with stress
  Behav Genet. 2005 Mar;35(2):189-98 PMCID: PMC3764451
  [ data ]

• Baum AE, Solberg LC, Kopp P, Ahmadiyeh N, Churchill G, Takahashi JS, Jameson JL, Redei EE
  Quantitative trait loci associated with elevated thyroid-stimulating hormone in the Wistar-Kyoto rat
  Endocrinology. 2005 Feb;146(2):870-8 PMCID: PMC3764449 [ Full Text ]
  [ data ]

• Beamer WG, Shultz KL, Donahue LR, Churchill GA, Sen S, Wergedal JR, Baylink DJ, Rosen CJ
  Quantitative trait loci for femoral and lumbar vertebral bone mineral density in C57BL/6J and C3h/HeJ inbred strains of mice. (2001).
  J Bone Miner Res. 2005 Sep;20(9):1701-12; discussion 1700 PMCID: PMC

• Bouma GJ, Albrecht KH, Washburn LL, Recknagel AK, Churchill GA, Eicher EM
  Gonadal sex reversal in mutant Dax1 XY mice: a failure to upregulate Sox9 in pre-Sertoli cells
  Development. 2005 Jul;132(13):3045-54 PMCID: PMC [ Full Text ]
  [ data ]

• Cui X, Hwang JT, Qiu J, Blades NJ, Churchill GA
  Improved statistical tests for differential gene expression by shrinking variance components estimates
  Biostatistics. 2005 Jan;6(1):59-75 PMCID: PMC [ Full Text ]

• Dorward AM, Shultz KL, Horton LG, Li R, Churchill GA, Beamer WG
  Distal Chr 4 harbors a genetic locus (Gct1) fundamental for spontaneous ovarian granulosa cell tumorigenesis in a mouse model
  Cancer Res. 2005 Feb 15;65(4):1259-64 PMCID: PMC [ Full Text ]
  [ data ]

• Li R, Lyons MA, Wittenburg H, Paigen B, Churchill GA
  Combining data from multiple inbred line crosses improves the power and resolution of quantitative trait loci mapping
  Genetics. 2005 Mar;169(3):1699-709 PMCID: PMC1449540 [ Full Text ]
  [ data 1 ]
  [ data 2 ]
  [ data 3 ]
  [ data 4 ]

• Lyons MA, Korstanje R, Li R, Sheehan SM, Walsh KA, Rollins JA, Carey MC, Paigen B, Churchill GA
  Single and interacting QTLs for cholesterol gallstones revealed in an intercross between mouse strains NZB and SM
  Mamm Genome. 2005 Mar;16(3):152-63 PMCID: PMC

• Mrug M, Li R, Cui X, Schoeb TR, Churchill GA, Guay-Woodford LM
  Kinesin family member 12 is a candidate polycystic kidney disease modifier in the cpk mouse
  J Am Soc Nephrol. 2005 Apr;16(4):905-16 PMCID: PMC [ Full Text ]
  [ data ]

• Peters LL, Zhang W, Lambert AJ, Brugnara C, Churchill GA, Platt OS
  Quantitative trait loci for baseline white blood cell count, platelet count, and mean platelet volume
  Mamm Genome. 2005 Oct;16(10):749-63 PMCID: PMC

• Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K
  Evidence of a large-scale functional organization of mammalian chromosomes
  PLoS Genet. 2005 Sep;1(3):e33 PMCID: PMC1201368 [ Full Text ]
  [ data ]

• Reifsnyder PC, Li R, Silveira PA, Churchill G, Serreze DV, Leiter EH
  Conditioning the genome identifies additional diabetes resistance loci in Type I diabetes resistant NOR/Lt mice
  Genes Immun. 2005 Sep;6(6):528-38 PMCID: PMC
  [ data ]

• Sen S, Satagopan JM, Churchill GA
  Quantitative trait locus study design from an information perspective
  Genetics. 2005 May;170(1):447-64 PMCID: PMC1449722 [ Full Text ]

• Tsaih SW, Lu L, Airey DC, Williams RW, Churchill GA
  Quantitative trait mapping in a diallel cross of recombinant inbred lines
  Mamm Genome. 2005 May;16(5):344-55 PMCID: PMC
  [ data ]

• Wittenburg H, Lyons MA, Li R, Kurtz U, Mossner J, Churchill GA, Carey MC, Paigen B
  Association of a lithogenic Abcg5/Abcg8 allele on Chromosome 17 (Lith9) with cholesterol gallstone formation in PERA/EiJ mice
  Mamm Genome. 2005 Jul;16(7):495-504 PMCID: PMC
  [ data ]

• Woo Y, Krueger W, Kaur A, Churchill G
  Experimental design for three-color and four-color gene expression microarrays
  Bioinformatics. 2005 Jun;21 Suppl 1:i459-67 PMCID: PMC [ Full Text ]
  [ data ]

• Yi N, Yandell BS, Churchill GA, Allison DB, Eisen EJ, Pomp D
  Bayesian model selection for genome-wide epistatic quantitative trait loci analysis
  Genetics. 2005 Jul;170(3):1333-44 PMCID: PMC1451197 [ Full Text ]
  [ data ]

• Bouxsein ML, Uchiyama T, Rosen CJ, Shultz KL, Donahue LR, Turner CH, Sen S, Churchill GA, Muller R, Beamer WG
  Mapping quantitative trait loci for vertebral trabecular bone volume fraction and microarchitecture in mice
  J Bone Miner Res. 2004 Apr;19(4):587-99 PMCID: PMC
  [ data ]

• Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, Burmeister M, Chesler EJ, Cheverud JM, Clapcote S, Cook MN, Cox RD, Crabbe JC, Crusio WE, Darvasi A, Deschepper CF, Doerge RW, Farber CR, Forejt J, Gaile D, Garlow SJ, Geiger H, Gershenfeld H, Gordon T, Gu J, Gu W, de Haan G, Hayes NL, Heller C, Himmelbauer H, Hitzemann R, Hunter K, Hsu HC, Iraqi FA, Ivandic B, Jacob HJ, Jansen RC, Jepsen KJ, Johnson DK, Johnson TE, Kempermann G, Kendziorski C, Kotb M, Kooy RF, Llamas B, Lammert F, Lassalle JM, Lowenstein PR, Lu L, Lusis A, Manly KF, Marcucio R, Matthews D, Medrano JF, Miller DR, Mittleman G, Mock BA, Mogil JS, Montagutelli X, Morahan G, Morris DG, Mott R, Nadeau JH, Nagase H, Nowakowski RS, O’Hara BF, Osadchuk AV, Page GP, Paigen B, Paigen K, Palmer AA, Pan HJ, Peltonen-Palotie L, Peirce J, Pomp D, Pravenec M, Prows DR, Qi Z, Reeves RH, Roder J, Rosen GD, Schadt EE, Schalkwyk LC, Seltzer Z, Shimomura K, Shou S, Sillanpää MJ, Siracusa LD, Snoeck HW, Spearow JL, Svenson K, Tarantino LM, Threadgill D, Toth LA, Valdar W, de Villena FP, Warden C, Whatley S, Williams RW, Wiltshire T, Yi N, Zhang D, Zhang M, Zou F; Complex Trait Consortium
  The Collaborative Cross, a community resource for the genetic analysis of complex traits
  Nat Genet. 2004 Nov;36(11):1133-7 [ Pubmed ] [full text]

• Churchill GA
  Using ANOVA to analyze microarray data
  Biotechniques. 2004 Aug;37(2):173-5, 177 PMCID: PMC

• Complex Trait Consortium
  The Collaborative Cross, a community resource for the genetic analysis of complex traits
  Nat Genet. 2004 Nov;36(11):1133-7 PMCID: PMC

• DiPetrillo K, Tsaih SW, Sheehan S, Johns C, Kelmenson P, Gavras H, Churchill GA, Paigen B
  Genetic analysis of blood pressure in C3H/HeJ and SWR/J mice
  Physiol Genomics. 2004 Apr 13;17(2):215-20 PMCID: PMC
  [ data ]

• Grubb SC, Churchill GA, Bogue MA
  A collaborative database of inbred mouse strain characteristics
  Bioinformatics. 2004 Nov 1;20(16):2857-9 PMCID: PMC [ Full Text ]

• Ishimori N, Li R, Kelmenson PM, Korstanje R, Walsh KA, Churchill GA, Forsman-Semb K, Paigen B
  Quantitative trait loci that determine plasma lipids and obesity in C57BL/6J and 129S1/SvImJ inbred mice
  J Lipid Res 2004 Sep;45(9):1624-1632 PMCID: PMC [ Full Text ]
  [ data ]

• Ishimori N, Li R, Kelmenson PM, Korstanje R, Walsh KA, Churchill GA, Forsman-Semb K, Paigen B
  Quantitative trait loci analysis for plasma HDL-cholesterol concentrations and atherosclerosis susceptibility between inbred mouse strains C57BL/6J and 129S1/SvIm
  J. Arterioscler Thromb Vasc Biol 2004 Jan;24(1):161-6 PMCID: PMC [ Full Text ]
  [ data ]

• Jin C, Lan H, Attie AD, Churchill GA, Bulutuglo D, Yandell BS
  Selective phenotyping for increased efficiency in genetic mapping studies
  Genetics. 2004 Dec;168(4):2285-93 PMCID: PMC1448737 [ Full Text ]

• Korstanje R, Li R, Howard T, Kelmenson P, Marshall J, Paigen B, Churchill G
  Influence of sex and diet on quantitative trait loci for HDL cholesterol levels in an SM/J by NZB/BlNJ intercross population
  J Lipid Res. 2004 May;45(5):881-8 PMCID: PMC [ Full Text ]

• Korstanje R, Eriksson P, Samnegard A, Olsson PG, Forsman-Semb K, Sen S, Churchill GA, Rollins J, Harris S, Hamsten A, Paigen B
  Locating Ath8, a locus for murine atherosclerosis susceptibility and testing several of its candidate genes in mice and humans
  Atherosclerosis. 2004 Dec;177(2):443-50 PMCID: PMC

• Korstanje R, Albers JJ, Wolfbauer G, Li R, Tu AY, Churchill GA, Paigen BJ
  Quantitative trait locus mapping of genes that regulate phospholipid transfer activity in SM/J and NZB/BlNJ inbred mice
  Arterioscler Thromb Vasc Biol. 2004 Jan;24(1):155-60 PMCID: PMC [ Full Text ]

• Lobenhofer EK, Cui X, Bennett L, Cable PL, Merrick BA, Churchill GA, Afshari CA
  Exploration of low-dose estrogen effects: identification of No Observed Transcriptional Effect Level (NOTEL)
  Toxicol Pathol. 2004 Jul-Aug;32(4):482-92 PMCID: PMC
  [ data ]

• Lyons MA, Wittenburg H, Li R, Walsh KA, Korstanje R, Churchill GA, Carey MC, Paigen B
  Quantitative trait loci that determine lipoprotein cholesterol levels in an intercross of 129S1/SvImJ and CAST/Ei inbred mice
  Physiol Genomics. 2004 Mar 12;17(1):60-8 PMCID: PMC [ data ]

• Lyons MA, Korstanje R, Li R, Walsh KA, Churchill GA, Carey MC, Paigen B
  Genetic contributors to lipoprotein cholesterol levels in an intercross of 129S1/SvImJ and RIIIS/J inbred mice
  Physiol Genomics. 2004 Apr 13;17(2):114-21 PMCID: PMC
  [ data ]

• Mikaelian I, Blades N, Churchill GA, Fancher K, Knowles BB, Eppig JT, Sundberg JP
  Proteotypic classification of spontaneous and transgenic mammary neoplasms
  Breast Cancer Res. 2004;6(6):R668-79 PMCID: PMC1064077 [ Full Text ]

• Peters LL, Swearingen RA, Andersen SG, Gwynn B, Lambert AJ, Li R, Lux SE, Churchill GA
  Identification of quantitative trait loci that modify the severity of hereditary spherocytosis in wan, a new mouse model of band-3 deficiency
  Blood. 2004 Apr 15;103(8):3233-40 PMCID: PMC [ Full Text ]
  [ data ]

• Solberg LC, Baum AE, Ahmadiyeh N, Shimomura K, Li R, Turek FW, Churchill GA, Takahashi JS, Redei EE
  Sex- and lineage-specific inheritance of depression-like behavior in the rat
  Mamm Genome. 2004 Aug;15(8):648-62 PMCID: PMC3764448
  [ data ]

• Woo Y, Affourtit J, Daigle S, Viale A, Johnson K, Naggert J, Churchill G
  A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms
  J Biomol Tech 2004 Dec;15:276-284 PMCID: PMC2291701 [ Full Text ]
  [ data ]

• Ahmadiyeh N, Churchill GA, Shimomura K, Solberg LC, Takahashi JS, Redei EE
  X-linked and lineage-dependent inheritance of coping responses to stress
  Mamm Genome. 2003 Nov;14(11):748-57 PMCID: PMC
  [ data ]

• Brich J, Shie FS, Howell BW, Li R, Tus K, Wakeland EK, Jin LW, Mumby M, Churchill G, Herz J, Cooper JA
  Genetic modulation of tau phosphorylation in the mouse
  J Neurosci. 2003 Jan 1;23(1):187-92 PMCID: PMC [ Full Text ]
  [ data ]

• Broman KW, Wu H, Sen S, Churchill GA
  R/qtl: QTL mapping in experimental crosses
  Bioinformatics. 2003 May 1;19(7):889-90 PMCID: PMC [ Full Text ]

• Complex Trait Consortium
  The nature and identification of quantitative trait loci: a community’s view
  Nat Rev Genet. 2003 Nov;4(11):911-6 PMCID: PMC2063446  [ Full Text ]

• Cui XQ, Kerr MK, Churchill GA
  Transformations for cDNA microarray data
  Stat Appl Genet Mol Biol. 2003;2:Article4 PMCID: PMC

• Cui XQ, Churchill GA
  Statistical tests for differential expression in cDNA microarray experiments
  Genome Biol. 2003;4(4):210 PMCID: PMC154570 [ Full Text ]

• Cui XQ, Churchill GA
  How many mice and how many arrays? Replication in mouse cDNA microarray experiments
  In: Methods of Microarray Data Analysis III, Kimberly F. Johnson and Simon M. Lin (eds). Kluwer Academic Publishers, Norwell, MA. 139-154. [full text]

• Lyons MA, Wittenburg H, Li R, Walsh KA, Leonard MR, Korstanje R, Churchill GA, Carey MC, Paigen B
  Lith6: a new QTL for cholesterol gallstones from an intercross of CAST/Ei and DBA/2J inbred mouse strains
  J Lipid Res. 2003 Sep;44(9):1763-71 PMCID: PMC [ Full Text ]
  [ data ]

• Lyons MA, Wittenburg H, Li R, Walsh KA, Leonard MR, Churchill GA, Carey MC, Paigen B
  New quantitative trait loci that contribute to cholesterol gallstone formation detected in an intercross of CAST/Ei and 129S1/SvImJ inbred mice
  Physiol Genomics. 2003 Aug 15;14(3):225-39 PMCID: PMC
  [ data ]

• Lyons MA, Wittenburg H, Li R, Walsh KA, Churchill GA, Carey MC, Paigen B
  Quantitative trait loci that determine lipoprotein cholesterol levels in DBA/2J and CAST/Ei inbred mice
  J Lipid Res. 2003 May;44(5):953-67 PMCID: PMC [ Full Text ]
  [ data ]

• Mathews CE, Graser RT, Bagley RJ, Caldwell JW, Li R, Churchill GA, Serreze DV, Leiter EH
  Genetic analysis of resistance to Type-1 Diabetes in ALR/Lt mice, a NOD-related strain with defenses against autoimmune-mediated diabetogenic stress
  Immunogenetics. 2003 Oct;55(7):491-6 PMCID: PMC 
  [ data ]

• Nadeau JH, Burrage LC, Restivo J, Pao YH, Churchill G, Hoit BD
  Pleiotropy, homeostasis, and functional networks based on assays of cardiovascular traits in genetically randomized populations
  Genome Res. 2003 Sep;13(9):2082-91 PMCID: PMC403692 [ Full Text ]
  [ data ]

• Sundberg JP, Boggess D, Silva KA, McElwee KJ, King LE, Li R, Churchill G, Cox GA
  Major locus on mouse chromosome 17 and minor locus on chromosome 9 are linked with alopecia areata in C3H/HeJ mice
  J Invest Dermatol. 2003 May;120(5):771-5 PMCID: PMC [ Full Text ]
  [ data ]

• Wang X, Le Roy I, Nicodeme E, Li R, Wagner R, Petros C, Churchill GA, Harris S, Darvasi A, Kirilovsky J, Roubertoux PL, Paigen B
  Using advanced intercross lines for high-resolution mapping of HDL cholesterol quantitative trait loci
  Genome Res. 2003 Jul;13(7):1654-64 PMCID: PMC403739 [ Full Text ] 
  [ data 1 ]
  [ data 2 ]

• Wittenburg H, Lyons MA, Li R, Churchill GA, Carey MC, Paigen B
  FXR and ABCG5/ABCG8 as determinants of cholesterol gallstone formation from quantitative trait locus mapping in mice
  Gastroenterology. 2003 Sep;125(3):868-81 PMCID: PMC
  [ data ]

• Wu H, Kerr MK, Cui XQ, Churchill GA
  MAANOVA: A software package for the analysis of spotted cDNA microarray experiments in the analysis of gene expression data: an overview of methods and software
  Parmgiani G, Garret ES, Irizarry RA, Zeger SL, (eds), Springer, NY. [full text]
  [ software ] Bad Link (Access Denied)
  [ software ] Bad Link (Access Denied)

• Bouxsein ML, Rosen CJ, Turner CH, Ackert CL, Shultz KL, Donahue LR, Churchill G, Adamo ML, Powell DR, Turner RT, Muller R, Beamer WG
  Generation of a new congenic mouse strain to test the relationships among serum insulin-like growth factor I, bone mineral density, and skeletal morphology in vivo
  J Bone Miner Res. 2002 Apr;17(4):570-9 PMCID: PMC

• Broman KW, Rowe LB, Churchill GA, Paigen K
  Crossover interference in the mouse
  Genetics. 2002 Mar;160(3):1123-31 PMCID: PMC1462020 [ Full Text ]
  [ data ]

• Churchill GA
  Fundamentals of experimental design for cDNA microarrays
  Nat Genet. 2002 Dec;32 Suppl:490-5 PMCID: PMC

• Kerr MK, Leiter EH, Picard L, Churchill GA
  Sources of Variation in Microarray Experiments
  In: Computational and Statistical Approaches to Genomics, Wei Zhang and Ilya Shmulevich (eds). Kluwer Academic Publishers 41-51. [full text]

• Kerr MK, Afsharie CA, Bennett L, Bushel P, Martinez J, Walker N, Churchill GA
  Statistical analysis of a gene expression microarray experiment with replication
  Statistica Sinica 2002;12:203-218 PMCID: PMC [ Full Text ]
  [ data ]

• Mahler M, Most C, Schmidtke S, Sundberg JP, Li R, Hedrich HJ, Churchill GA
  Genetics of colitis susceptibility in IL-10-deficient mice: backcross versus F2 results contrasted by principal component analysis
  Genomics. 2002 Sep;80(3):274-82 PMCID: PMC
  [ data 1 ]
  [ data 2 ]

• Oleksiak MF, Churchill GA, Crawford DL
  Variation in gene expression within and among natural populations
  Nat Genet. 2002 Oct;32(2):261-6 PMCID: PMC

• Pitman WA, Korstanje R, Churchill GA, Nicodeme E, Albers JJ, Cheung MC, Staton MA, Sampson SS, Harris S, Paigen B
  Quantitative trait locus mapping of genes that regulate HDL cholesterol in SM/J and NZB/B1NJ inbred mice
  Physiol Genomics. 2002;9(2):93-102 PMCID: PMC [ Full Text ]
  [ data ]

• Smith Richards BK, Belton BN, Poole AC, Mancuso JJ, Churchill GA, Li R, Volaufova J, Zuberi A, York B
  QTL analysis of self-selected macronutrient diet intake: fat, carbohydrate, and total kilocalories
  Physiol Genomics. 2002 Dec 3;11(3):205-17 PMCID: PMC [ Full Text ]
  [ data ]

• Sugiyama F, Churchill GA, Li R, Libby LJ, Carver T, Yagami K, John SW, Paigen B
  QTL associated with blood pressure, heart rate, and heart weight in CBA/CaJ and BALB/cJ mice
  Physiol Genomics. 2002 Jul 12;10(1):5-12 PMCID: PMC
  [ data ]

• Wittenburg H, Lammert F, Wang DQ, Churchill GA, Li R, Bouchard G, Carey MC, Paigen B
  Interacting QTLs for cholesterol gallstones and gallbladder mucin in AKR and SWR strains of mice
  Physiol Genomics. 2002 Feb 11;8(1):67-77 PMCID: PMC
  [ data ]

• Beamer WG, Shultz KL, Donahue LR, Churchill GA, Sen S, Wergedal JR, Baylink DJ, Rosen CJ
  Quantitative trait loci for femoral and lumbar vertebral bone mineral density in C57BL/6J and C3H/HeJ inbred strains of mice
  J Bone Miner Res. 2001 Jul;16(7):1195-206 PMCID: PMC 
  [ data ]

• Churchill GA
  Epistasis
  In: Encyclopedia of Genetics. Academic Press, New York [full text]

• Churchill GA, Oliver B
  Sex, flies and microarrays
  Nat Genet. 2001 Dec;29(4):355-6 PMCID: PMC

• Churchill GA
  Inferring ancestral character states
  In: Limits to Knowledge in Evolutionary Genetics, Clegg M (ed). Plenum Press [full text]

• Farmer MA, Sundberg JP, Bristol IJ, Churchill GA, Li R, Elson CO, Leiter EH
  A major quantitative trait locus on chromosome 3 controls colitis severity in IL-10-deficient mice
  Proc Natl Acad Sci U S A 2001 Nov 20;98:13820-13825 PMCID: PMC61125 [ Full Text ]
  [ data ]

• Kerr MK, Churchill GA
  Statistical design and the analysis of gene expression microarray data
  Genet Res. 2001 Apr;77(2):123-8 PMCID: PMC

• Kerr MK, Churchill GA
  Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments
  Proc Natl Acad Sci U S A 2001 Jul 31;98:8961-8965 PMCID: PMC55356 [ Full Text ]

• Kerr MK, Churchill GA
  Experimental design for gene expression microarrays
  Biostatistics. 2001 Jun;2(2):183-201 PMCID: PMC [ Full Text ]

• Kim JH, Sen S, Avery CS, Simpson E, Chandler P, Nishina PM, Churchill GA, Naggert JK
  Genetic analysis of a new mouse model for non-insulin-dependent diabetes
  Genomics. 2001 Jun 15;74(3):273-86 PMCID: PMC
  [ data ]

• Reeb-Whitaker CK, Paigen B, Beamer WG, Bronson RT, Churchill GA, Schweitzer IB, Myers DD
  The impact of reduced frequency of cage changes on the health of mice housed in ventilated cages
  Lab Anim. 2001 Jan;35(1):58-73 PMCID: PMC [ Full Text ]

• Sen S, Churchill GA
  A statistical framework for quantitative trait mapping
  Genetics. 2001 Sep;159(1):371-87 PMCID: PMC1461799 [ Full Text ]
  [ data ]
  [ software ] Bad Link (Access Denied)
  [ software ] Bad Link (Access Denied)

• Shimomura K, Low-Zeddies SS, King DP, Steeves TDL, Whiteley A, Kushla J, Zemenides PD, Lin A, Vitaterna MH, Churchill GA, Takahashi JS
  Genome-wide epistatic interaction analysis reveals complex genetic determinants of circadian behavior in mice
  Genome Res. 2001 Jun;11(6):959-80 PMCID: PMC [ Full Text ]
  [ data ]

• Sugiyama F, Churchill GA, Higgins DC, Johns C, Makaritsis KP, Gavras H, Paigen B
  Concordance of murine quantitative trait loci for salt-induced hypertension with rat and human loci
  Genomics. 2001 Jan 1;71(1):70-7 PMCID: PMC
  [ data ]

• Churchill GA
  Complexity and uncertainty in genetics
  Sig Bio Newsletter 19:3-8 [full text]

• Clemens KE, Churchill G, Bhatt N, Richardson K, Noonan FP
  Genetic control of susceptibility to UV-induced immunosuppression by interacting quantitative trait loci
  Genes Immun. 2000;1(4):251-9 PMCID: PMC [ Full Text ]
  [ data ]

• Guay-Woodford LM, Wright CJ, Walz G, Churchill GA
  Quantitative trait loci modulate renal cystic disease severity in the mouse bpk model
  J Am Soc Nephrol. 2000 Jul;11(7):1253-60 PMCID: PMC [ Full Text ]
  [ data ]

• Kerr MK, Martin M, Churchill GA
  Analysis of variance for gene expression microarray data
  J Comput Biol. 2000;7(6):819-37 PMCID: PMC
  [ data ]

• Livingstone KD, Churchill G, Jahn MK
  Linkage mapping in populations with karyotypic rearrangements
  J Hered. 2000 Nov-Dec;91(6):423-8 PMCID: PMC [ Full Text ]

• Morozov P, Sitnikova T, Churchill G, Ayala FJ, Rzhetsky A
  A new method for characterizing replacement rate variation in molecular sequences. Application of the Fourier and wavelet models to Drosophila and mammalian proteins
  Genetics. 2000 Jan;154(1):381-95 PMCID: PMC1460898 [ Full Text ]

• Reifsnyder PC, Churchill G, Leiter EH
  Maternal environment and genotype interact to establish diabesity in mice
  Genome Res 2000 Oct;10:1568-1578 PMCID: PMC310941 [ Full Text ]
  [ data ]

• Rosen CJ, Churchill GA, Donahue LR, Shultz KL, Burgess JK, Powell DR, Beamer WG
  Mapping quantitative trait loci for serum insulin-like growth factor-1 levels in mice
  Bone. 2000 Oct;27(4):521-8 PMCID: PMC
  [ data ]

• Shpak M, Churchill GA
  The information content of a character under a Markov model of evolution
  Mol Phylogenet Evol. 2000 Nov;17(2):231-43 PMCID: PMC

1999

• Beamer WG, Shultz KL, Churchill GA, Frankel WN, Baylink DJ, Rosen CJ, Donahue LR
  Quantitative trait loci for bone density in C57BL/6J and CAST/EiJ inbred mice
  Mamm Genome. 1999 Nov;10(11):1043-9
  PMCID: PMC
  [ data ]

• Blauth SL, Steffens JC, Churchill GA, Mutschler MA
  Identification of QTL’s controlling acylsugar fatty acid composition in an intraspecific population of Lycopersicon pennellii (Corr.) D’Arcy
  Theor Appl Genetics 1999 99(1-2):373-381
  PMCID: PMC

• Churchill GA, Lazareva B
  Bayesian restoration of a hidden Markov chain with applications to DNA sequencing
  J Comput Biol. 1999 Summer;6(2):261-77
  PMCID: PMC

• Mahler M, Bristol IJ, Sundberg JP, Churchill GA, Birkenmeier EH, Elson CO, Leiter EH
  Genetic analysis of susceptibility to dextran sulfate sodium-induced colitis in mice
  Genomics. 1999 Jan 15;55(2):147-56
  PMCID: PMC

• Ripol MI, Churchill GA, da Silva JAG, Sorrells M
  Statistical aspects of genetic mapping in autopolyploids
  Gene. 1999 Jul 22;235(1-2):31-41
  PMCID: PMC

• Schultz TR, Churchill GA
  The role of subjectivity in reconstructing ancestral character states: A Bayesian approach to unknown rates, states and transformation asymmetries
  Syst Biol 1999;48:651-664 doi.org/10.1080/106351599260229
  [ Full Text ]
• Upadhya P, Churchill G, Birkenmeier EH, Barker JE, Frankel WN
  Genetic modifiers of polycystic kidney disease in intersubspecific KAT2J mutants
  Genomics. 1999 Jun 1;58(2):129-37
  PMCID: PMC

1998

• Beamer WG, Shultz KL, Tennent BJ, Nadeau JH, Churchill GA, Eicher EM
  Multigenic and imprinting control of ovarian granulosa cell tumorigenesis in mice
  Cancer Res. 1998 Aug 15;58(16):3694-9
  PMCID: PMC
  [ Full Text ]

• Blauth SL, Churchill GA, Mutschler MA
  Identification of quantitative trait loci associated with acylsugar accumulation using intraspecific populations of the wild tomato, Lycopersicon pennellii
  Theor Appl Genet 1998 Mar;96(3-4):458-467
  PMCID: PMC

• Churchill GA, Doerge RW
  Mapping quantitative trait loci in experimental populations
  In: Molecular Dissection of Complex Traits, Paterson AH (ed). CRC Press 31-41.
  [full text]

• Churchill GA
  Hidden Markov models
  In: Encyclopedia of Biostatistics. John Wiley & Sons, Ltd 3:1908-1916.
  [full text]

1997

• Simonsen KL, Churchill GA
  A Markov chain model of coalescence with recombination
  Theor Popul Biol. 1997 Aug;52(1):43-59
  PMCID: PMC

1996

• Doerge RW, Churchill GA
  Permutation tests for multiple loci affecting a quantitative character
  Genetics. 1996 Jan;142(1):285-94
  PMCID: PMC1206957
  [ Full Text ]

• Felsenstein J, Churchill GA
  A hidden Markov model approach to variation among sites in rate of evolution
  Mol Biol Evol. 1996 Jan;13(1):93-104
  PMCID: PMC
  [ Full Text ]

• Kelly C, Churchill GA
  Biases in amino acid replacement matrices and alignment scores due to rate heterogeneity
  J Comput Biol. 1996 Summer;3(2):307-18
  PMCID: PMC

• Nachman MW, Churchill GA
  Heterogeneity in rates of recombination across the mouse genome
  Genetics. 1996 Feb;142(2):537-48
  PMCID: PMC1206986
  [ Full Text ]

• Schultz TR, Cocroft RB, Churchill GA
  The reconstruction of ancestral character states
  Evolution 1996 50:504-511
  PMCID: PMC
  [ Full Text ]

1995

• Churchill GA
  Accurate restoration of DNA sequences
  In: Case Studies in Bayesian Statistics 2, Gatsonis C, Hodges JS, Kass RE, Singpurwalla ND (eds).
  [full text]

• Simonsen KL, Churchill GA, Aquadro CF
  Properties of statistical tests of neutrality for DNA polymorphism data
  Genetics. 1995 Sep;141(1):413-29
  PMCID: PMC1206737
  [ Full Text ]

• Thorne JL, Churchill GA
  Estimation and reliability of molecular sequence alignments
  Biometrics 1995 Mar; 51:100-113
  PMCID: PMC

1994

• Churchill GA, Doerge RW
  Empirical threshold values for quantitative trait mapping
  Genetics. 1994 Nov;138(3):963-71
  PMCID: PMC1206241
  [ Full Text ]

1993

• Anderson JA, Churchil GA, Atrique JE, Tanksley SD, Sorrells ME
  Opimizing parental selection for genetic linkage maps
  Genome. 1993 Feb;36(1):181-6
  PMCID: PMC

• Churchill GA, Giovannoni JJ, Tanksley SD
  Pooled-sampling makes high-resolution mapping practical with DNA markers
  Proc Natl Acad Sci U S A. 1993 Jan 1;90(1):16-20
  PMCID: PMC45590
  [ Full Text ]

• Navidi WC, Churchill GA, von Haeseler A
  Phylogenetic inference: linear invariants and maximum likelihood
  Biometrics. 1993 Jun;49(2):543-55
  PMCID: PMC

• von Haeseler A, Churchill GA
  Network models for sequence evolution
  J Mol Evol. 1993 Jul;37(1):77-85
  PMCID: PMC

1992

• Churchill GA, von Haeseler A, Navidi WC
  Sample size for a phylogenetic inference
  Mol Biol Evol. 1992 Jul;9(4):753-69
  PMCID: PMC
  [ Full Text ]

• Churchill GA, Waterman MS
  The accuracy of DNA sequences: estimating sequence quality
  Genomics. 1992 Sep;14(1):89-98
  PMCID: PMC

• Churchill GA
  Hidden Markov chains and the analysis of genome structure
  Comput Chem 1992;16:107-115
  PMCID: PMC
  [ Full Text ]

1991

• Navidi WC, Churchill GA, von Haeseler A
  Methods for inferring phylogenies from nucleic acid sequence data by using maximum likelihood and linear invariants
  Mol Biol Evol. 1991 Jan;8(1):128-43
  PMCID: PMC
  [ Full Text ]

1990

• Churchill GA, Daniels DL, Waterman MS
  The distribution of restriction enzyme sites in Escherichia coli
  Nucleic Acids Res. 1990 Feb 11;18(3):589-97
  PMCID: PMC333466
  [ Full Text ]

1989

• Churchill GA
  Stochastic models for heterogeneous DNA sequences
  Bull Math Biol. 1989;51(1):79-94
  PMCID: PMC
  [ software ]

• Fangman WL, Henly JW, Churchill G, Brewer BJ
  Stable maintenance of a 35-base-pair yeast mitochondrial genome
  Mol Cell Biol. 1989 May;9(5):1917-21
  PMCID: PMC362982
  [ Full Text ]

1986

• Breslow NE, Churchill G, Nesmith B, Thomas PR, Beckwith JB, Othersen HB, D’Angio GJ
  Clinicopathologic features and prognosis for Wilms’ tumor patients with metastases at diagnosis
  Cancer. 1986 Dec 1;58(11):2501-11
  PMCID: PMC

1985

• Breslow N, Churchill G, Beckwith JB, Fernbach DJ, Otherson HB, Tefft M, D’Angio GJ
  Prognosis for Wilms’ tumor patients with nonmetastatic disease at diagnosis–results of the second National Wilms’ Tumor Study
  J Clin Oncol. 1985 Apr;3(4):521-31
  PMCID: PMC